Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm8330-201ENSMUST00000182754 1008 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm4575-201ENSMUST00000182991 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm8709-201ENSMUST00000183230 1012 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm10293-201ENSMUST00000076317 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm6316-201ENSMUST00000082064 1020 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Chmp6P0C0A3 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Chmp6P0C0A3 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gm8097-201ENSMUST00000117903 829 ntBASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gm6376-201ENSMUST00000209407 580 ntBASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gm8655-201ENSMUST00000221159 852 ntBASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Chmp6P0C0A3 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.84■□□□□ 0.29
Chmp6P0C0A3 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Chmp6P0C0A3 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Chmp6P0C0A3 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms