Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 AC069562.2-201ENSMUST00000224644 2146 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm11764-201ENSMUST00000120221 623 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm2308-201ENSMUST00000166539 1004 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm27628-201ENSMUST00000184911 107 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm43935-201ENSMUST00000203569 1050 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Gm5421-201ENSMUST00000181698 2354 ntBASIC12.05□□□□□ -0.48
Hoxd3P09027 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Hoxd3P09027 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Hoxd3P09027 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm14140-201ENSMUST00000119999 995 ntBASIC12.04□□□□□ -0.48
Hoxd3P09027 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm8000-201ENSMUST00000188378 592 ntBASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm37153-201ENSMUST00000193637 231 ntBASIC12.04□□□□□ -0.48
Hoxd3P09027 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC12.04□□□□□ -0.48
Hoxd3P09027 AC127302.2-201ENSMUST00000215212 268 ntBASIC12.04□□□□□ -0.48
Hoxd3P09027 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Hoxd3P09027 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Hoxd3P09027 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC12.03□□□□□ -0.48
Hoxd3P09027 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Gm5682-201ENSMUST00000173402 505 ntBASIC12.03□□□□□ -0.48
Hoxd3P09027 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC12.03□□□□□ -0.48
Hoxd3P09027 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Hoxd3P09027 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms