Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
Col3a1P08121 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Col3a1P08121 Gm27321-201ENSMUST00000185021 205 ntBASIC18.34■□□□□ 0.53
Col3a1P08121 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC18.34■□□□□ 0.53
Col3a1P08121 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC18.34■□□□□ 0.53
Col3a1P08121 CT010506.4-201ENSMUST00000225457 351 ntBASIC18.34■□□□□ 0.53
Col3a1P08121 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.34■□□□□ 0.53
Col3a1P08121 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col3a1P08121 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC18.33■□□□□ 0.53
Col3a1P08121 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Mir449b-201ENSMUST00000104833 80 ntBASIC18.33■□□□□ 0.53
Col3a1P08121 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Col3a1P08121 AC164567.1-201ENSMUST00000219185 960 ntBASIC18.33■□□□□ 0.53
Col3a1P08121 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.33■□□□□ 0.53
Col3a1P08121 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col3a1P08121 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.33■□□□□ 0.52
Col3a1P08121 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Col3a1P08121 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC18.33■□□□□ 0.52
Col3a1P08121 Gm2810-201ENSMUST00000118681 990 ntBASIC18.33■□□□□ 0.52
Col3a1P08121 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col3a1P08121 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.32■□□□□ 0.52
Col3a1P08121 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC18.32■□□□□ 0.52
Col3a1P08121 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col3a1P08121 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Gm12017-201ENSMUST00000122453 1003 ntBASIC18.32■□□□□ 0.52
Col3a1P08121 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC18.32■□□□□ 0.52
Col3a1P08121 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.32■□□□□ 0.52
Col3a1P08121 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.32■□□□□ 0.52
Col3a1P08121 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC18.32■□□□□ 0.52
Col3a1P08121 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC18.32■□□□□ 0.52
Col3a1P08121 AC131187.1-201ENSMUST00000224567 809 ntBASIC18.32■□□□□ 0.52
Col3a1P08121 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col3a1P08121 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.31■□□□□ 0.52
Col3a1P08121 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col3a1P08121 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col3a1P08121 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Col3a1P08121 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC18.31■□□□□ 0.52
Col3a1P08121 Gm10253-201ENSMUST00000194270 940 ntBASIC18.31■□□□□ 0.52
Col3a1P08121 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col3a1P08121 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC18.31■□□□□ 0.52
Col3a1P08121 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms