Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.04□□□□□ -0.16
Lmx1bO88609 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lmx1bO88609 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Lmx1bO88609 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lmx1bO88609 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Lmx1bO88609 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Gm45212-201ENSMUST00000205831 3403 ntBASIC14.02□□□□□ -0.16
Lmx1bO88609 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.02□□□□□ -0.16
Lmx1bO88609 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Lmx1bO88609 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Lmx1bO88609 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Lmx1bO88609 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.02□□□□□ -0.17
Lmx1bO88609 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Lmx1bO88609 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Lmx1bO88609 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms