Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC12.86□□□□□ -0.35
Hmgb3O54879 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Hmgb3O54879 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC12.86□□□□□ -0.35
Hmgb3O54879 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Gm13186-201ENSMUST00000118031 316 ntBASIC12.86□□□□□ -0.35
Hmgb3O54879 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC12.86□□□□□ -0.35
Hmgb3O54879 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Hmgb3O54879 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Tfap2a-203ENSMUST00000223869 2037 ntBASIC12.86□□□□□ -0.35
Hmgb3O54879 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Hmgb3O54879 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Zfp264-201ENSMUST00000208656 1563 ntBASIC12.86□□□□□ -0.35
Hmgb3O54879 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Hmgb3O54879 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Gm38327-201ENSMUST00000195852 1755 ntBASIC12.85□□□□□ -0.35
Hmgb3O54879 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Hmgb3O54879 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Hmgb3O54879 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC12.84□□□□□ -0.35
Hmgb3O54879 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC12.84□□□□□ -0.35
Hmgb3O54879 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Hmgb3O54879 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Trmt13-210ENSMUST00000198454 880 ntBASIC12.84□□□□□ -0.35
Hmgb3O54879 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Hmgb3O54879 Gm9768-201ENSMUST00000206007 2861 ntBASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms