Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Gm17971-201ENSMUST00000190239 806 ntBASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Birc2-201ENSMUST00000054878 378 ntBASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Prpf40aQ9R1C7 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Prpf40aQ9R1C7 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Prpf40aQ9R1C7 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Umpk-ps-201ENSMUST00000211897 827 ntBASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Prpf40aQ9R1C7 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Gm7153-201ENSMUST00000117092 455 ntBASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Gm34391-201ENSMUST00000203706 907 ntBASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Prpf40aQ9R1C7 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms