Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm27525-201ENSMUST00000184465 107 ntBASIC17.35■□□□□ 0.37
Smc1aQ9CU62 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Smc1aQ9CU62 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Gm43352-201ENSMUST00000196419 3065 ntBASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Smc1aQ9CU62 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Smc1aQ9CU62 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Smc1aQ9CU62 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Smc1aQ9CU62 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Smc1aQ9CU62 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Smc1aQ9CU62 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Gm37935-201ENSMUST00000192012 982 ntBASIC17.33■□□□□ 0.36
Smc1aQ9CU62 AC132104.2-201ENSMUST00000215011 266 ntBASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Smc1aQ9CU62 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Gm25925-201ENSMUST00000158314 306 ntBASIC17.32■□□□□ 0.36
Smc1aQ9CU62 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Mir5131-201ENSMUST00000175426 93 ntBASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Smc1aQ9CU62 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms