Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Gm27741-201ENSMUST00000185060 237 ntBASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Gm28659-201ENSMUST00000188013 759 ntBASIC18.74■□□□□ 0.59
Brf1Q8CFK2 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.74■□□□□ 0.59
Brf1Q8CFK2 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Brf1Q8CFK2 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Gm7286-201ENSMUST00000182691 1007 ntBASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Brf1Q8CFK2 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Brf1Q8CFK2 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Brf1Q8CFK2 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Gm15173-201ENSMUST00000122049 433 ntBASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Brf1Q8CFK2 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms