Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 AC161829.1-201ENSMUST00000220298 281 ntBASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Atg4aQ8C9S8 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Atg4aQ8C9S8 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Atg4aQ8C9S8 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Atg4aQ8C9S8 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.83■□□□□ 0.61
Atg4aQ8C9S8 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Atg4aQ8C9S8 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Atg4aQ8C9S8 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Gm15173-201ENSMUST00000122049 433 ntBASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Atg4aQ8C9S8 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 AC154412.1-201ENSMUST00000226540 2786 ntBASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Atg4aQ8C9S8 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gm6550-201ENSMUST00000187574 993 ntBASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gm28659-201ENSMUST00000188013 759 ntBASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gm10060-201ENSMUST00000212002 111 ntBASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC18.81■□□□□ 0.6
Atg4aQ8C9S8 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms