Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Gm13410-201ENSMUST00000117058 1415 ntBASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Usp40Q8BWR4 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 AC139382.1-201ENSMUST00000221402 498 ntBASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp40Q8BWR4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 CT025555.1-201ENSMUST00000225901 1217 ntBASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC21.19■□□□□ 0.98
Usp40Q8BWR4 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm45293-201ENSMUST00000209754 1812 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm18889-201ENSMUST00000174284 929 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Mir6990-201ENSMUST00000183724 91 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm10576-201ENSMUST00000191927 825 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm37171-201ENSMUST00000192636 1185 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm5312-201ENSMUST00000203728 547 ntBASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp40Q8BWR4 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Usp40Q8BWR4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Usp40Q8BWR4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms