Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cpsf4Q8BQZ5 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cpsf4Q8BQZ5 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Cpsf4Q8BQZ5 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cpsf4Q8BQZ5 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cpsf4Q8BQZ5 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cpsf4Q8BQZ5 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Gm44454-201ENSMUST00000198541 138 ntBASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Cpsf4Q8BQZ5 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Gm27459-201ENSMUST00000184860 107 ntBASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC15.07■□□□□ 0
Cpsf4Q8BQZ5 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Cpsf4Q8BQZ5 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms