Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm5184-201ENSMUST00000220417 1702 ntBASIC18.29■□□□□ 0.52
Trim56Q80VI1 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Gm27300-201ENSMUST00000184085 97 ntBASIC18.29■□□□□ 0.52
Trim56Q80VI1 Gm27335-201ENSMUST00000184758 97 ntBASIC18.29■□□□□ 0.52
Trim56Q80VI1 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.29■□□□□ 0.52
Trim56Q80VI1 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Gm14140-201ENSMUST00000119999 995 ntBASIC18.28■□□□□ 0.52
Trim56Q80VI1 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim56Q80VI1 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.27■□□□□ 0.52
Trim56Q80VI1 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim56Q80VI1 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim56Q80VI1 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Gm43514-201ENSMUST00000198852 424 ntBASIC18.26■□□□□ 0.51
Trim56Q80VI1 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.26■□□□□ 0.51
Trim56Q80VI1 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.26■□□□□ 0.51
Trim56Q80VI1 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim56Q80VI1 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim56Q80VI1 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 112.9 ms