Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
ShhQ62226 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.48□□□□□ -0.09
ShhQ62226 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
ShhQ62226 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
ShhQ62226 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
ShhQ62226 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
ShhQ62226 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.47□□□□□ -0.09
ShhQ62226 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.47□□□□□ -0.09
ShhQ62226 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
ShhQ62226 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC14.47□□□□□ -0.09
ShhQ62226 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Prob1-201ENSMUST00000097619 3021 ntBASIC14.47□□□□□ -0.09
ShhQ62226 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
ShhQ62226 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.46□□□□□ -0.09
ShhQ62226 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 App-207ENSMUST00000227737 2827 ntBASIC14.46□□□□□ -0.09
ShhQ62226 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
ShhQ62226 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Gm6550-201ENSMUST00000187574 993 ntBASIC14.46□□□□□ -0.09
ShhQ62226 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
ShhQ62226 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.46□□□□□ -0.09
ShhQ62226 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.46□□□□□ -0.09
ShhQ62226 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
ShhQ62226 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
ShhQ62226 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
ShhQ62226 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
ShhQ62226 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
ShhQ62226 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
ShhQ62226 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
ShhQ62226 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
ShhQ62226 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
ShhQ62226 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.45□□□□□ -0.1
ShhQ62226 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.45□□□□□ -0.1
ShhQ62226 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.45□□□□□ -0.1
ShhQ62226 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
ShhQ62226 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
ShhQ62226 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC14.44□□□□□ -0.1
ShhQ62226 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Sybu-209ENSMUST00000228639 4113 ntBASIC14.44□□□□□ -0.1
ShhQ62226 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.44□□□□□ -0.1
ShhQ62226 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
ShhQ62226 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
ShhQ62226 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms