Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm25287-201ENSMUST00000103846 110 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Gm22918-201ENSMUST00000103855 110 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm5866-201ENSMUST00000177881 973 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm2272-201ENSMUST00000194903 582 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.1□□□□□ -0.15
Usf1Q61069 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC14.1□□□□□ -0.15
Usf1Q61069 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Usf1Q61069 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Usf1Q61069 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.09□□□□□ -0.15
Usf1Q61069 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.09□□□□□ -0.15
Usf1Q61069 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.09□□□□□ -0.15
Usf1Q61069 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Usf1Q61069 Gm6598-201ENSMUST00000202719 2615 ntBASIC14.09□□□□□ -0.15
Usf1Q61069 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Usf1Q61069 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Usf1Q61069 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
Usf1Q61069 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Usf1Q61069 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC14.08□□□□□ -0.16
Usf1Q61069 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usf1Q61069 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.08□□□□□ -0.16
Usf1Q61069 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.08□□□□□ -0.16
Usf1Q61069 Gm5779-201ENSMUST00000218467 910 ntBASIC14.08□□□□□ -0.16
Usf1Q61069 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.08□□□□□ -0.16
Usf1Q61069 Gm10154-201ENSMUST00000084445 354 ntBASIC14.08□□□□□ -0.16
Usf1Q61069 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Usf1Q61069 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usf1Q61069 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms