Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 AC154231.1-201ENSMUST00000220564 2175 ntBASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim58Q5NCC9 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Gm10584-201ENSMUST00000207036 2628 ntBASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim58Q5NCC9 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Gm15358-201ENSMUST00000119249 520 ntBASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 AC093926.2-201ENSMUST00000214468 1228 ntBASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim58Q5NCC9 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Gm28033-201ENSMUST00000184224 96 ntBASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim58Q5NCC9 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim58Q5NCC9 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim58Q5NCC9 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Trim58Q5NCC9 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim58Q5NCC9 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms