Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Cdx2P43241 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Cdx2P43241 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Gm24158-201ENSMUST00000175263 71 ntBASIC14.71□□□□□ -0.05
Cdx2P43241 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.71□□□□□ -0.05
Cdx2P43241 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.71□□□□□ -0.05
Cdx2P43241 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
Cdx2P43241 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC14.71□□□□□ -0.05
Cdx2P43241 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdx2P43241 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdx2P43241 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.71□□□□□ -0.06
Cdx2P43241 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdx2P43241 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.7□□□□□ -0.06
Cdx2P43241 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Cdx2P43241 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.7□□□□□ -0.06
Cdx2P43241 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx2P43241 Gm27622-201ENSMUST00000183779 60 ntBASIC14.7□□□□□ -0.06
Cdx2P43241 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx2P43241 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cdx2P43241 Gm5626-201ENSMUST00000222151 1058 ntBASIC14.7□□□□□ -0.06
Cdx2P43241 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.7□□□□□ -0.06
Cdx2P43241 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cdx2P43241 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdx2P43241 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.7□□□□□ -0.06
Cdx2P43241 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.7□□□□□ -0.06
Cdx2P43241 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdx2P43241 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.69□□□□□ -0.06
Cdx2P43241 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
Cdx2P43241 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.69□□□□□ -0.06
Cdx2P43241 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.69□□□□□ -0.06
Cdx2P43241 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.69□□□□□ -0.06
Cdx2P43241 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Cdx2P43241 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Cdx2P43241 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.68□□□□□ -0.06
Cdx2P43241 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.68□□□□□ -0.06
Cdx2P43241 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Cdx2P43241 Gm26596-201ENSMUST00000180464 2655 ntBASIC14.68□□□□□ -0.06
Cdx2P43241 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC14.68□□□□□ -0.06
Cdx2P43241 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC14.68□□□□□ -0.06
Cdx2P43241 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC14.68□□□□□ -0.06
Cdx2P43241 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.68□□□□□ -0.06
Cdx2P43241 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.68□□□□□ -0.06
Cdx2P43241 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.68□□□□□ -0.06
Cdx2P43241 AC131710.1-201ENSMUST00000228336 990 ntBASIC14.68□□□□□ -0.06
Cdx2P43241 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Cdx2P43241 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms