Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col3a1P08121 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Col3a1P08121 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Col3a1P08121 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Col3a1P08121 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Col3a1P08121 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC18.38■□□□□ 0.53
Col3a1P08121 Gm6973-201ENSMUST00000117080 721 ntBASIC18.38■□□□□ 0.53
Col3a1P08121 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.38■□□□□ 0.53
Col3a1P08121 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC18.38■□□□□ 0.53
Col3a1P08121 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col3a1P08121 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col3a1P08121 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.37■□□□□ 0.53
Col3a1P08121 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC18.37■□□□□ 0.53
Col3a1P08121 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.37■□□□□ 0.53
Col3a1P08121 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Col3a1P08121 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.37■□□□□ 0.53
Col3a1P08121 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC18.37■□□□□ 0.53
Col3a1P08121 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
Col3a1P08121 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Col3a1P08121 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC18.37■□□□□ 0.53
Col3a1P08121 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Col3a1P08121 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Gm25948-201ENSMUST00000175334 112 ntBASIC18.36■□□□□ 0.53
Col3a1P08121 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 AC131710.1-201ENSMUST00000228336 990 ntBASIC18.36■□□□□ 0.53
Col3a1P08121 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.36■□□□□ 0.53
Col3a1P08121 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Col3a1P08121 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Col3a1P08121 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.35■□□□□ 0.53
Col3a1P08121 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.35■□□□□ 0.53
Col3a1P08121 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Col3a1P08121 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC18.35■□□□□ 0.53
Col3a1P08121 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 AC140397.2-201ENSMUST00000224213 834 ntBASIC18.35■□□□□ 0.53
Col3a1P08121 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC18.35■□□□□ 0.53
Col3a1P08121 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.35■□□□□ 0.53
Col3a1P08121 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Col3a1P08121 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Col3a1P08121 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms