Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Hmgb3O54879 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC12.9□□□□□ -0.34
Hmgb3O54879 AC159205.3-201ENSMUST00000224614 874 ntBASIC12.9□□□□□ -0.34
Hmgb3O54879 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Hmgb3O54879 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 BC037039-201ENSMUST00000192003 2205 ntBASIC12.9□□□□□ -0.34
Hmgb3O54879 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Hmgb3O54879 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Hmgb3O54879 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC12.9□□□□□ -0.35
Hmgb3O54879 Gm10605-202ENSMUST00000183019 3198 ntBASIC12.89□□□□□ -0.35
Hmgb3O54879 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm7712-202ENSMUST00000222331 1510 ntBASIC12.89□□□□□ -0.35
Hmgb3O54879 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 AC174678.1-201ENSMUST00000228007 2749 ntBASIC12.89□□□□□ -0.35
Hmgb3O54879 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm8495-201ENSMUST00000188740 694 ntBASIC12.89□□□□□ -0.35
Hmgb3O54879 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.89□□□□□ -0.35
Hmgb3O54879 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Hmgb3O54879 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm20049-201ENSMUST00000219950 730 ntBASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC12.88□□□□□ -0.35
Hmgb3O54879 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC12.88□□□□□ -0.35
Hmgb3O54879 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Hmgb3O54879 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Hmgb3O54879 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Hmgb3O54879 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Hmgb3O54879 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms