Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.81□□□□□ -0.04
Clk3O35492 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Gm27742-201ENSMUST00000184667 60 ntBASIC14.81□□□□□ -0.04
Clk3O35492 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Clk3O35492 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
Clk3O35492 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clk3O35492 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Clk3O35492 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.8□□□□□ -0.04
Clk3O35492 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clk3O35492 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
Clk3O35492 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Clk3O35492 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Gm7367-201ENSMUST00000057611 492 ntBASIC14.79□□□□□ -0.04
Clk3O35492 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Clk3O35492 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Clk3O35492 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clk3O35492 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14.78□□□□□ -0.04
Clk3O35492 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Clk3O35492 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Clk3O35492 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.78□□□□□ -0.04
Clk3O35492 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Clk3O35492 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clk3O35492 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms