Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Shmt1P50431 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Shmt1P50431 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Shmt1P50431 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
Shmt1P50431 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Shmt1P50431 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Shmt1P50431 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC24.19■■□□□ 1.46
Shmt1P50431 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
Shmt1P50431 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Shmt1P50431 Terc-201ENSMUST00000082862 423 ntBASIC24.18■■□□□ 1.46
Shmt1P50431 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC24.18■■□□□ 1.46
Shmt1P50431 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Shmt1P50431 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Shmt1P50431 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Shmt1P50431 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Shmt1P50431 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Shmt1P50431 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Shmt1P50431 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Shmt1P50431 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Shmt1P50431 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Shmt1P50431 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Shmt1P50431 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC24.15■■□□□ 1.46
Shmt1P50431 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
Shmt1P50431 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Shmt1P50431 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Shmt1P50431 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Shmt1P50431 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Shmt1P50431 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.46
Shmt1P50431 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.14■■□□□ 1.45
Shmt1P50431 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Shmt1P50431 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Shmt1P50431 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Shmt1P50431 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Shmt1P50431 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Shmt1P50431 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Shmt1P50431 AC151971.4-201ENSMUST00000214717 704 ntBASIC24.13■■□□□ 1.45
Shmt1P50431 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Shmt1P50431 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Shmt1P50431 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC24.12■■□□□ 1.45
Shmt1P50431 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC24.12■■□□□ 1.45
Shmt1P50431 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Shmt1P50431 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Shmt1P50431 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24.12■■□□□ 1.45
Shmt1P50431 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Shmt1P50431 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
Shmt1P50431 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Shmt1P50431 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Shmt1P50431 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.1■■□□□ 1.45
Shmt1P50431 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Shmt1P50431 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
Shmt1P50431 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Shmt1P50431 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Shmt1P50431 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC24.09■■□□□ 1.45
Shmt1P50431 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Shmt1P50431 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Shmt1P50431 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC24.09■■□□□ 1.45
Shmt1P50431 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Shmt1P50431 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC24.08■■□□□ 1.45
Shmt1P50431 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC24.08■■□□□ 1.45
Shmt1P50431 Gm27502-201ENSMUST00000183495 199 ntBASIC24.08■■□□□ 1.45
Shmt1P50431 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Shmt1P50431 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Shmt1P50431 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Shmt1P50431 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.07■■□□□ 1.44
Shmt1P50431 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.07■■□□□ 1.44
Shmt1P50431 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Shmt1P50431 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.07■■□□□ 1.44
Shmt1P50431 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Shmt1P50431 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Shmt1P50431 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Shmt1P50431 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Shmt1P50431 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Shmt1P50431 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC24.05■■□□□ 1.44
Shmt1P50431 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Shmt1P50431 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Shmt1P50431 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Shmt1P50431 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC24.03■■□□□ 1.44
Shmt1P50431 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
Shmt1P50431 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Shmt1P50431 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Shmt1P50431 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Shmt1P50431 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Shmt1P50431 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Shmt1P50431 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Shmt1P50431 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.02■■□□□ 1.44
Shmt1P50431 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Shmt1P50431 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Shmt1P50431 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24■■□□□ 1.43
Shmt1P50431 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC24■■□□□ 1.43
Shmt1P50431 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Shmt1P50431 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Shmt1P50431 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC24■■□□□ 1.43
Shmt1P50431 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Shmt1P50431 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Shmt1P50431 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC23.99■■□□□ 1.43
Shmt1P50431 Gm12366-201ENSMUST00000121722 873 ntBASIC23.99■■□□□ 1.43
Shmt1P50431 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC23.99■■□□□ 1.43
Shmt1P50431 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC23.99■■□□□ 1.43
Shmt1P50431 Gm5786-201ENSMUST00000085368 882 ntBASIC23.99■■□□□ 1.43
Shmt1P50431 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC23.98■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms