Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.66□□□□□ -0.06
Trim3Q9R1R2 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Wnt10b-206ENSMUST00000228546 2709 ntBASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim3Q9R1R2 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Trim3Q9R1R2 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim3Q9R1R2 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Gm15165-201ENSMUST00000118140 502 ntBASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim3Q9R1R2 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms