Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gm13597-201ENSMUST00000121239 375 ntBASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gm17271-201ENSMUST00000165535 355 ntBASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Dancr-204ENSMUST00000132389 2347 ntBASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Gm38318-201ENSMUST00000195769 1706 ntBASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Gm44492-201ENSMUST00000197012 141 ntBASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim54Q9ERP3 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Gm17968-201ENSMUST00000194902 784 ntBASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Trim54Q9ERP3 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 AC154621.1-201ENSMUST00000226155 1119 ntBASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim54Q9ERP3 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim54Q9ERP3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms