Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Gm45784-201ENSMUST00000188360 142 ntBASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Scn4aQ9ER60 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Gm23931-201ENSMUST00000103842 109 ntBASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Gm6222-201ENSMUST00000120787 396 ntBASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Gm44799-201ENSMUST00000207639 1202 ntBASIC21.03■□□□□ 0.96
Scn4aQ9ER60 AC140451.2-201ENSMUST00000228030 664 ntBASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 AC164565.1-201ENSMUST00000217520 1484 ntBASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Scn4aQ9ER60 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Gm6756-201ENSMUST00000180647 1620 ntBASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Gm18222-201ENSMUST00000202416 1387 ntBASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Scn4aQ9ER60 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Scn4aQ9ER60 Gm5912-201ENSMUST00000122282 1438 ntBASIC21.02■□□□□ 0.95
Scn4aQ9ER60 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Trav4d-2-201ENSMUST00000120914 335 ntBASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 AA619741-201ENSMUST00000195095 646 ntBASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gm14723-201ENSMUST00000118686 215 ntBASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gm9728-201ENSMUST00000200197 1055 ntBASIC21.01■□□□□ 0.95
Scn4aQ9ER60 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 CT010506.4-201ENSMUST00000225457 351 ntBASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Scn4aQ9ER60 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Gm14722-201ENSMUST00000118943 689 ntBASIC21■□□□□ 0.95
Scn4aQ9ER60 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC21■□□□□ 0.95
Scn4aQ9ER60 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC21■□□□□ 0.95
Scn4aQ9ER60 Gm9229-201ENSMUST00000222777 126 ntBASIC21■□□□□ 0.95
Scn4aQ9ER60 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC21■□□□□ 0.95
Scn4aQ9ER60 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Gm7820-201ENSMUST00000121012 1052 ntBASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 AC156016.3-201ENSMUST00000228623 344 ntBASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Gm27572-201ENSMUST00000183702 255 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms