Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Ushbp1Q8R370 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Gm27702-201ENSMUST00000184512 56 ntBASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Gm9172-201ENSMUST00000212092 954 ntBASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Ushbp1Q8R370 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm8825-201ENSMUST00000182565 998 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm4518-201ENSMUST00000182638 718 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ushbp1Q8R370 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ushbp1Q8R370 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Ushbp1Q8R370 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.39■□□□□ 0.38
Ushbp1Q8R370 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 AC127302.2-201ENSMUST00000215212 268 ntBASIC17.39■□□□□ 0.37
Ushbp1Q8R370 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ushbp1Q8R370 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms