Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC21.27■■□□□ 1
Usp40Q8BWR4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC21.27■■□□□ 1
Usp40Q8BWR4 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC21.27■■□□□ 1
Usp40Q8BWR4 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Gm42473-201ENSMUST00000201056 2291 ntBASIC21.27■■□□□ 1
Usp40Q8BWR4 Shroom3-211ENSMUST00000225438 5742 ntBASIC21.27■■□□□ 1
Usp40Q8BWR4 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC21.27■■□□□ 1
Usp40Q8BWR4 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Usp40Q8BWR4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Usp40Q8BWR4 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm44335-201ENSMUST00000196879 141 ntBASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm44297-201ENSMUST00000198304 141 ntBASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm44346-201ENSMUST00000198851 141 ntBASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Gm26917-202ENSMUST00000192833 3329 ntBASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp40Q8BWR4 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Auts2-212ENSMUST00000178555 309 ntBASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Gm19430-201ENSMUST00000193847 2137 ntBASIC21.25■□□□□ 0.99
Usp40Q8BWR4 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp40Q8BWR4 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Gm20628-201ENSMUST00000177363 3215 ntBASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC21.24■□□□□ 0.99
Usp40Q8BWR4 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Gm5628-201ENSMUST00000222318 1049 ntBASIC21.23■□□□□ 0.99
Usp40Q8BWR4 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp40Q8BWR4 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Gm15920-201ENSMUST00000118998 402 ntBASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Gm2272-201ENSMUST00000194903 582 ntBASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Gpr146-202ENSMUST00000053120 1040 ntBASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Gm37166-201ENSMUST00000195473 2474 ntBASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp40Q8BWR4 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp40Q8BWR4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 79.3 ms