Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim56Q80VI1 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gm8318-201ENSMUST00000182954 872 ntBASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gm6443-201ENSMUST00000203599 874 ntBASIC18.32■□□□□ 0.52
Trim56Q80VI1 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.32■□□□□ 0.52
Trim56Q80VI1 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.32■□□□□ 0.52
Trim56Q80VI1 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim56Q80VI1 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.31■□□□□ 0.52
Trim56Q80VI1 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.31■□□□□ 0.52
Trim56Q80VI1 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim56Q80VI1 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.31■□□□□ 0.52
Trim56Q80VI1 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.3■□□□□ 0.52
Trim56Q80VI1 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.3■□□□□ 0.52
Trim56Q80VI1 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim56Q80VI1 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim56Q80VI1 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms