Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp49Q6P9L4 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp49Q6P9L4 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp49Q6P9L4 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp49Q6P9L4 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Gm34391-201ENSMUST00000203706 907 ntBASIC17.43■□□□□ 0.38
Usp49Q6P9L4 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp49Q6P9L4 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Gm8655-201ENSMUST00000221159 852 ntBASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.42■□□□□ 0.38
Usp49Q6P9L4 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Gm7461-201ENSMUST00000058918 827 ntBASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Usp49Q6P9L4 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44357-201ENSMUST00000195897 142 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm19658-201ENSMUST00000196231 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44367-201ENSMUST00000196836 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44350-201ENSMUST00000197197 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44390-201ENSMUST00000197533 144 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44313-201ENSMUST00000198018 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44486-201ENSMUST00000198508 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44314-201ENSMUST00000199263 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44394-201ENSMUST00000199558 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44484-201ENSMUST00000199873 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44466-201ENSMUST00000200264 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Gm44359-201ENSMUST00000200671 138 ntBASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Usp49Q6P9L4 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms