Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Sh3rf1Q69ZI1 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Sh3rf1Q69ZI1 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Gm27459-201ENSMUST00000184860 107 ntBASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Sh3rf1Q69ZI1 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Mir8098-201ENSMUST00000184011 137 ntBASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 AC125350.1-201ENSMUST00000225115 903 ntBASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Sh3rf1Q69ZI1 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Gm13884-201ENSMUST00000118103 829 ntBASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Sh3rf1Q69ZI1 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Sh3rf1Q69ZI1 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms