Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Trim28Q62318 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Trim28Q62318 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trim28Q62318 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC20.09■□□□□ 0.81
Trim28Q62318 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC20.09■□□□□ 0.81
Trim28Q62318 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC20.09■□□□□ 0.81
Trim28Q62318 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC20.09■□□□□ 0.81
Trim28Q62318 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Trim28Q62318 Gpr146-202ENSMUST00000053120 1040 ntBASIC20.09■□□□□ 0.81
Trim28Q62318 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
Trim28Q62318 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Trim28Q62318 Gm13410-201ENSMUST00000117058 1415 ntBASIC20.09■□□□□ 0.81
Trim28Q62318 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
Trim28Q62318 Gm45412-201ENSMUST00000210217 2275 ntBASIC20.09■□□□□ 0.81
Trim28Q62318 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Ccdc166-201ENSMUST00000182172 2584 ntBASIC20.08■□□□□ 0.81
Trim28Q62318 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC20.08■□□□□ 0.81
Trim28Q62318 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Trim28Q62318 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trim28Q62318 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trim28Q62318 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
Trim28Q62318 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trim28Q62318 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Trim28Q62318 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trim28Q62318 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim28Q62318 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim28Q62318 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC20.07■□□□□ 0.8
Trim28Q62318 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC20.07■□□□□ 0.8
Trim28Q62318 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC20.07■□□□□ 0.8
Trim28Q62318 Gm10154-201ENSMUST00000084445 354 ntBASIC20.07■□□□□ 0.8
Trim28Q62318 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim28Q62318 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC20.07■□□□□ 0.8
Trim28Q62318 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Trim28Q62318 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trim28Q62318 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
Trim28Q62318 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Trim28Q62318 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim28Q62318 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC20.06■□□□□ 0.8
Trim28Q62318 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC20.06■□□□□ 0.8
Trim28Q62318 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC20.06■□□□□ 0.8
Trim28Q62318 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Gm26917-202ENSMUST00000192833 3329 ntBASIC20.06■□□□□ 0.8
Trim28Q62318 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trim28Q62318 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trim28Q62318 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
Trim28Q62318 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim28Q62318 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim28Q62318 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms