Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
Trim27Q62158 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.11■□□□□ 0.65
Trim27Q62158 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.11■□□□□ 0.65
Trim27Q62158 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Trim27Q62158 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC19.11■□□□□ 0.65
Trim27Q62158 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC19.11■□□□□ 0.65
Trim27Q62158 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trim27Q62158 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trim27Q62158 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trim27Q62158 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Trim27Q62158 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.1■□□□□ 0.65
Trim27Q62158 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Trim27Q62158 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.1■□□□□ 0.65
Trim27Q62158 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trim27Q62158 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Trim27Q62158 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trim27Q62158 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trim27Q62158 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
Trim27Q62158 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trim27Q62158 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Trim27Q62158 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trim27Q62158 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Trim27Q62158 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim27Q62158 Gm11839-201ENSMUST00000120647 1953 ntBASIC19.08■□□□□ 0.65
Trim27Q62158 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Trim27Q62158 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC19.08■□□□□ 0.65
Trim27Q62158 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Trim27Q62158 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.08■□□□□ 0.65
Trim27Q62158 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trim27Q62158 Gm25990-201ENSMUST00000102440 86 ntBASIC19.08■□□□□ 0.64
Trim27Q62158 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim27Q62158 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC19.08■□□□□ 0.64
Trim27Q62158 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC19.08■□□□□ 0.64
Trim27Q62158 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Trim27Q62158 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim27Q62158 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim27Q62158 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trim27Q62158 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Gm6089-201ENSMUST00000197666 938 ntBASIC19.07■□□□□ 0.64
Trim27Q62158 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Trim27Q62158 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trim27Q62158 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Trim27Q62158 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim27Q62158 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim27Q62158 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Trim27Q62158 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Trim27Q62158 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trim27Q62158 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms