Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Gm44454-201ENSMUST00000198541 138 ntBASIC17.69■□□□□ 0.42
Usp28Q5I043 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
Usp28Q5I043 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp28Q5I043 Grk6-207ENSMUST00000225925 2769 ntBASIC17.68■□□□□ 0.42
Usp28Q5I043 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.68■□□□□ 0.42
Usp28Q5I043 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usp28Q5I043 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Rprl3-201ENSMUST00000157400 290 ntBASIC17.68■□□□□ 0.42
Usp28Q5I043 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.68■□□□□ 0.42
Usp28Q5I043 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usp28Q5I043 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp28Q5I043 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.67■□□□□ 0.42
Usp28Q5I043 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.67■□□□□ 0.42
Usp28Q5I043 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Usp28Q5I043 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp28Q5I043 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Usp28Q5I043 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC17.66■□□□□ 0.42
Usp28Q5I043 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.66■□□□□ 0.42
Usp28Q5I043 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Usp28Q5I043 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Usp28Q5I043 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
Usp28Q5I043 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Usp28Q5I043 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Usp28Q5I043 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.65■□□□□ 0.42
Usp28Q5I043 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Gm9172-201ENSMUST00000212092 954 ntBASIC17.65■□□□□ 0.42
Usp28Q5I043 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Usp28Q5I043 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms