Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Upf3bQ3ULL6 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Upf3bQ3ULL6 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 AC154757.1-201ENSMUST00000228289 336 ntBASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Upf3bQ3ULL6 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Gm13884-201ENSMUST00000118103 829 ntBASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Upf3bQ3ULL6 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Gm25990-201ENSMUST00000102440 86 ntBASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Gm7862-201ENSMUST00000121461 292 ntBASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
Upf3bQ3ULL6 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Upf3bQ3ULL6 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms