Protein–RNA interactions for Protein: Q3KNL4

UPF0728 protein C10orf53 homolog, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q3KNL4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Q3KNL4 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.32■□□□□ 0.04
Q3KNL4 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC15.32■□□□□ 0.04
Q3KNL4 Gm10231-201ENSMUST00000181584 441 ntBASIC15.32■□□□□ 0.04
Q3KNL4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.32■□□□□ 0.04
Q3KNL4 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.32■□□□□ 0.04
Q3KNL4 Gm10175-202ENSMUST00000208752 441 ntBASIC15.32■□□□□ 0.04
Q3KNL4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Q3KNL4 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Q3KNL4 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Q3KNL4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Gm11950-201ENSMUST00000121615 838 ntBASIC15.31■□□□□ 0.04
Q3KNL4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Q3KNL4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.31■□□□□ 0.04
Q3KNL4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.31■□□□□ 0.04
Q3KNL4 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Q3KNL4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Gm45328-201ENSMUST00000210942 917 ntBASIC15.3■□□□□ 0.04
Q3KNL4 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
Q3KNL4 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Q3KNL4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Q3KNL4 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Q3KNL4 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Q3KNL4 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Gm25016-201ENSMUST00000158399 131 ntBASIC15.29■□□□□ 0.04
Q3KNL4 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Gm6345-202ENSMUST00000180900 204 ntBASIC15.29■□□□□ 0.04
Q3KNL4 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Q3KNL4 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Q3KNL4 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Q3KNL4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Q3KNL4 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC15.29■□□□□ 0.04
Q3KNL4 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms