Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.15■□□□□ 0.02
Col28a1Q2UY11 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col28a1Q2UY11 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Gm18669-201ENSMUST00000216049 778 ntBASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.13■□□□□ 0.01
Col28a1Q2UY11 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Gm7153-201ENSMUST00000117092 455 ntBASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col28a1Q2UY11 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms