Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Lig3P97386 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Lig3P97386 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lig3P97386 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.97■□□□□ 0.31
Lig3P97386 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.97■□□□□ 0.31
Lig3P97386 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
Lig3P97386 Gm26308-201ENSMUST00000157768 69 ntBASIC16.97■□□□□ 0.31
Lig3P97386 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.97■□□□□ 0.31
Lig3P97386 Gm4535-201ENSMUST00000182274 558 ntBASIC16.97■□□□□ 0.31
Lig3P97386 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.97■□□□□ 0.31
Lig3P97386 Gm45683-201ENSMUST00000210825 1247 ntBASIC16.97■□□□□ 0.31
Lig3P97386 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.97■□□□□ 0.31
Lig3P97386 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Lig3P97386 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.97■□□□□ 0.31
Lig3P97386 Gm10355-201ENSMUST00000097146 517 ntBASIC16.97■□□□□ 0.31
Lig3P97386 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lig3P97386 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
Lig3P97386 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
Lig3P97386 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.96■□□□□ 0.31
Lig3P97386 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Lig3P97386 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.96■□□□□ 0.31
Lig3P97386 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lig3P97386 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lig3P97386 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Lig3P97386 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lig3P97386 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Lig3P97386 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lig3P97386 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lig3P97386 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Lig3P97386 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Lig3P97386 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Gm14057-201ENSMUST00000120631 482 ntBASIC16.95■□□□□ 0.3
Lig3P97386 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.95■□□□□ 0.3
Lig3P97386 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Lig3P97386 Gm6089-201ENSMUST00000197666 938 ntBASIC16.95■□□□□ 0.3
Lig3P97386 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.95■□□□□ 0.3
Lig3P97386 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Lig3P97386 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.95■□□□□ 0.3
Lig3P97386 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Lig3P97386 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lig3P97386 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Lig3P97386 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.94■□□□□ 0.3
Lig3P97386 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC16.94■□□□□ 0.3
Lig3P97386 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
Lig3P97386 AV026068-213ENSMUST00000223675 1171 ntBASIC16.94■□□□□ 0.3
Lig3P97386 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.94■□□□□ 0.3
Lig3P97386 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.94■□□□□ 0.3
Lig3P97386 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lig3P97386 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms