Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Efs-202ENSMUST00000227037 2540 ntBASIC18.62■□□□□ 0.57
Rfx1P48377 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Rfx1P48377 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Rfx1P48377 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
Rfx1P48377 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Rfx1P48377 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.62■□□□□ 0.57
Rfx1P48377 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx1P48377 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Rfx1P48377 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC18.61■□□□□ 0.57
Rfx1P48377 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.61■□□□□ 0.57
Rfx1P48377 Gm45058-201ENSMUST00000205810 766 ntBASIC18.61■□□□□ 0.57
Rfx1P48377 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC18.61■□□□□ 0.57
Rfx1P48377 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Rfx1P48377 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Rfx1P48377 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Rfx1P48377 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx1P48377 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Rfx1P48377 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.6■□□□□ 0.57
Rfx1P48377 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
Rfx1P48377 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Rfx1P48377 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC18.6■□□□□ 0.57
Rfx1P48377 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.6■□□□□ 0.57
Rfx1P48377 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Rfx1P48377 Gm11839-201ENSMUST00000120647 1953 ntBASIC18.6■□□□□ 0.57
Rfx1P48377 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
Rfx1P48377 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx1P48377 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Rfx1P48377 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Rfx1P48377 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.59■□□□□ 0.57
Rfx1P48377 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Gm18959-201ENSMUST00000208954 655 ntBASIC18.59■□□□□ 0.57
Rfx1P48377 Gm21559-201ENSMUST00000220638 855 ntBASIC18.59■□□□□ 0.57
Rfx1P48377 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Gm8587-201ENSMUST00000076538 843 ntBASIC18.59■□□□□ 0.57
Rfx1P48377 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Rfx1P48377 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx1P48377 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Gm44443-201ENSMUST00000204396 5633 ntBASIC18.58■□□□□ 0.57
Rfx1P48377 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx1P48377 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx1P48377 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
Rfx1P48377 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx1P48377 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.58■□□□□ 0.56
Rfx1P48377 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.58■□□□□ 0.56
Rfx1P48377 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx1P48377 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.58■□□□□ 0.56
Rfx1P48377 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms