Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HttP42859 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HttP42859 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC16.42■□□□□ 0.22
HttP42859 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HttP42859 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Gm45293-201ENSMUST00000209754 1812 ntBASIC16.42■□□□□ 0.22
HttP42859 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC16.42■□□□□ 0.22
HttP42859 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Gm8318-201ENSMUST00000182954 872 ntBASIC16.42■□□□□ 0.22
HttP42859 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.42■□□□□ 0.22
HttP42859 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Gm18624-201ENSMUST00000220966 658 ntBASIC16.42■□□□□ 0.22
HttP42859 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HttP42859 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
HttP42859 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HttP42859 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HttP42859 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.41■□□□□ 0.22
HttP42859 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC16.41■□□□□ 0.22
HttP42859 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HttP42859 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HttP42859 Gm10499-201ENSMUST00000174094 934 ntBASIC16.41■□□□□ 0.22
HttP42859 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
HttP42859 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HttP42859 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Ighv8-7-201ENSMUST00000194349 297 ntBASIC16.41■□□□□ 0.22
HttP42859 Gm7619-201ENSMUST00000210649 1282 ntBASIC16.41■□□□□ 0.22
HttP42859 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC16.41■□□□□ 0.22
HttP42859 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HttP42859 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HttP42859 Rarb-207ENSMUST00000225921 2756 ntBASIC16.4■□□□□ 0.22
HttP42859 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HttP42859 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Gm37424-201ENSMUST00000191727 561 ntBASIC16.4■□□□□ 0.22
HttP42859 Gm42693-201ENSMUST00000196779 631 ntBASIC16.4■□□□□ 0.22
HttP42859 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.4■□□□□ 0.22
HttP42859 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC16.4■□□□□ 0.22
HttP42859 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
HttP42859 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HttP42859 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC16.4■□□□□ 0.22
HttP42859 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HttP42859 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.4■□□□□ 0.22
HttP42859 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HttP42859 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HttP42859 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC16.39■□□□□ 0.21
HttP42859 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC16.39■□□□□ 0.21
HttP42859 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HttP42859 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.39■□□□□ 0.21
HttP42859 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.39■□□□□ 0.21
HttP42859 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.39■□□□□ 0.21
HttP42859 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC16.39■□□□□ 0.21
HttP42859 Gm15806-201ENSMUST00000120696 955 ntBASIC16.39■□□□□ 0.21
HttP42859 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HttP42859 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.39■□□□□ 0.21
HttP42859 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HttP42859 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.39■□□□□ 0.21
HttP42859 Gm12960-201ENSMUST00000120017 1066 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms