Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC20.48■□□□□ 0.87
Col18a1P39061 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC20.48■□□□□ 0.87
Col18a1P39061 Gm46209-201ENSMUST00000217912 553 ntBASIC20.48■□□□□ 0.87
Col18a1P39061 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Col18a1P39061 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col18a1P39061 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col18a1P39061 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC20.47■□□□□ 0.87
Col18a1P39061 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.47■□□□□ 0.87
Col18a1P39061 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col18a1P39061 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC20.46■□□□□ 0.87
Col18a1P39061 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 CT030657.3-201ENSMUST00000222707 1200 ntBASIC20.46■□□□□ 0.87
Col18a1P39061 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.46■□□□□ 0.87
Col18a1P39061 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col18a1P39061 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Col18a1P39061 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC20.46■□□□□ 0.87
Col18a1P39061 Gm45331-201ENSMUST00000209868 554 ntBASIC20.46■□□□□ 0.87
Col18a1P39061 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC20.46■□□□□ 0.87
Col18a1P39061 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col18a1P39061 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Col18a1P39061 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col18a1P39061 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 AC131068.2-201ENSMUST00000226175 1453 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Gm5303-201ENSMUST00000117943 1252 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Gm11425-201ENSMUST00000119608 498 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Gm5479-201ENSMUST00000160578 435 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col18a1P39061 Gm9396-201ENSMUST00000076703 567 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Col18a1P39061 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col18a1P39061 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC20.45■□□□□ 0.86
Col18a1P39061 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col18a1P39061 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Col18a1P39061 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Col18a1P39061 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Col18a1P39061 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Gm7390-201ENSMUST00000212452 1216 ntBASIC20.44■□□□□ 0.86
Col18a1P39061 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Col18a1P39061 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC20.44■□□□□ 0.86
Col18a1P39061 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Gm10766-202ENSMUST00000194123 606 ntBASIC20.44■□□□□ 0.86
Col18a1P39061 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 AC156016.3-201ENSMUST00000228623 344 ntBASIC20.44■□□□□ 0.86
Col18a1P39061 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col18a1P39061 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Col18a1P39061 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Col18a1P39061 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col18a1P39061 Gm6756-201ENSMUST00000180647 1620 ntBASIC20.42■□□□□ 0.86
Col18a1P39061 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms