Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Gm8116-201ENSMUST00000182917 1201 ntBASIC18.07■□□□□ 0.48
Col1a1P11087 Gm27989-201ENSMUST00000184721 107 ntBASIC18.07■□□□□ 0.48
Col1a1P11087 Gm43767-201ENSMUST00000198933 381 ntBASIC18.07■□□□□ 0.48
Col1a1P11087 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col1a1P11087 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col1a1P11087 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
Col1a1P11087 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Gm13015-201ENSMUST00000118674 204 ntBASIC18.06■□□□□ 0.48
Col1a1P11087 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC18.06■□□□□ 0.48
Col1a1P11087 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC18.06■□□□□ 0.48
Col1a1P11087 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
Col1a1P11087 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col1a1P11087 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Col1a1P11087 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.05■□□□□ 0.48
Col1a1P11087 Gm38327-201ENSMUST00000195852 1755 ntBASIC18.05■□□□□ 0.48
Col1a1P11087 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Col1a1P11087 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC18.05■□□□□ 0.48
Col1a1P11087 Gm14767-201ENSMUST00000121559 586 ntBASIC18.05■□□□□ 0.48
Col1a1P11087 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC18.05■□□□□ 0.48
Col1a1P11087 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.05■□□□□ 0.48
Col1a1P11087 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC18.05■□□□□ 0.48
Col1a1P11087 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Col1a1P11087 Gm18049-201ENSMUST00000208909 581 ntBASIC18.05■□□□□ 0.48
Col1a1P11087 Gm7730-201ENSMUST00000212486 454 ntBASIC18.05■□□□□ 0.48
Col1a1P11087 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col1a1P11087 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.04■□□□□ 0.48
Col1a1P11087 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC18.04■□□□□ 0.48
Col1a1P11087 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Gm7488-201ENSMUST00000117148 684 ntBASIC18.04■□□□□ 0.48
Col1a1P11087 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Col1a1P11087 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC18.04■□□□□ 0.48
Col1a1P11087 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Col1a1P11087 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col1a1P11087 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col1a1P11087 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Gm14719-201ENSMUST00000121891 340 ntBASIC18.03■□□□□ 0.48
Col1a1P11087 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Col1a1P11087 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.03■□□□□ 0.48
Col1a1P11087 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Col1a1P11087 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.03■□□□□ 0.48
Col1a1P11087 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Col1a1P11087 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.03■□□□□ 0.48
Col1a1P11087 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Col1a1P11087 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col1a1P11087 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms