Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC16.95■□□□□ 0.3
Chmp6P0C0A3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Vti1a-206ENSMUST00000225529 1244 ntBASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Chmp6P0C0A3 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Chmp6P0C0A3 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Gm11452-201ENSMUST00000122376 690 ntBASIC16.93■□□□□ 0.3
Chmp6P0C0A3 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Chmp6P0C0A3 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gm5864-201ENSMUST00000202263 970 ntBASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gm9172-201ENSMUST00000212092 954 ntBASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Gm7461-201ENSMUST00000058918 827 ntBASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Sybu-209ENSMUST00000228639 4113 ntBASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms