Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Nr1i3O35627 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Gm15372-201ENSMUST00000120729 834 ntBASIC16.72■□□□□ 0.27
Nr1i3O35627 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.72■□□□□ 0.27
Nr1i3O35627 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Nr1i3O35627 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Nr1i3O35627 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
Nr1i3O35627 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.71■□□□□ 0.27
Nr1i3O35627 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Nr1i3O35627 Gm12497-201ENSMUST00000138778 237 ntBASIC16.71■□□□□ 0.27
Nr1i3O35627 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC16.71■□□□□ 0.27
Nr1i3O35627 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.71■□□□□ 0.27
Nr1i3O35627 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Nr1i3O35627 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Nr1i3O35627 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Nr1i3O35627 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Nr1i3O35627 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.7■□□□□ 0.26
Nr1i3O35627 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gm8344-201ENSMUST00000119813 856 ntBASIC16.7■□□□□ 0.26
Nr1i3O35627 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gm25745-201ENSMUST00000174945 133 ntBASIC16.7■□□□□ 0.26
Nr1i3O35627 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Gm18622-201ENSMUST00000219361 595 ntBASIC16.7■□□□□ 0.26
Nr1i3O35627 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.7■□□□□ 0.26
Nr1i3O35627 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Nr1i3O35627 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.7■□□□□ 0.26
Nr1i3O35627 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Nr1i3O35627 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
Nr1i3O35627 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Nr1i3O35627 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.69■□□□□ 0.26
Nr1i3O35627 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms