Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Tnfsf11O35235 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Tnfsf11O35235 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Tnfsf11O35235 Gm10605-202ENSMUST00000183019 3198 ntBASIC12.18□□□□□ -0.46
Tnfsf11O35235 Gm43697-201ENSMUST00000199637 2581 ntBASIC12.18□□□□□ -0.46
Tnfsf11O35235 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Tnfsf11O35235 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Efs-202ENSMUST00000227037 2540 ntBASIC12.17□□□□□ -0.46
Tnfsf11O35235 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm11539-201ENSMUST00000119837 557 ntBASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm13168-201ENSMUST00000121771 632 ntBASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm11839-201ENSMUST00000120647 1953 ntBASIC12.17□□□□□ -0.46
Tnfsf11O35235 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Tnfsf11O35235 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Gm12669-201ENSMUST00000122162 1009 ntBASIC12.16□□□□□ -0.46
Tnfsf11O35235 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 AC156016.1-201ENSMUST00000227190 1035 ntBASIC12.16□□□□□ -0.46
Tnfsf11O35235 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Gm15442-201ENSMUST00000117905 1527 ntBASIC12.16□□□□□ -0.46
Tnfsf11O35235 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Tnfsf11O35235 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Gm29707-201ENSMUST00000196325 491 ntBASIC12.15□□□□□ -0.46
Tnfsf11O35235 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 AC153881.1-201ENSMUST00000214448 284 ntBASIC12.15□□□□□ -0.46
Tnfsf11O35235 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Tnfsf11O35235 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms