Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.11□□□□□ -0.15
Pcdhgb8A0A140LI48 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Pcdhgb8A0A140LI48 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Wnt10b-204ENSMUST00000226655 1807 ntBASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm29707-201ENSMUST00000196325 491 ntBASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Pcdhgb8A0A140LI48 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Pcdhgb8A0A140LI48 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Mir3081-201ENSMUST00000175305 84 ntBASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Phf7-203ENSMUST00000226565 1971 ntBASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Pcdhgb8A0A140LI48 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms