Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Gm6858-201ENSMUST00000208582 1468 ntBASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC14.69□□□□□ -0.06
Trim3Q9R1R2 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gm34391-201ENSMUST00000203706 907 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Birc2-201ENSMUST00000054878 378 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Asic1-205ENSMUST00000228185 1818 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Trim3Q9R1R2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Gm42473-201ENSMUST00000201056 2291 ntBASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Trim3Q9R1R2 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Gm24589-201ENSMUST00000116692 94 ntBASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Gm44454-201ENSMUST00000198541 138 ntBASIC14.66□□□□□ -0.06
Trim3Q9R1R2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim3Q9R1R2 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms