Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Gm9172-201ENSMUST00000212092 954 ntBASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Prpf40aQ9R1C7 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Prpf40aQ9R1C7 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Gm27867-201ENSMUST00000184778 125 ntBASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Prpf40aQ9R1C7 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Prpf40aQ9R1C7 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
Prpf40aQ9R1C7 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Asic1-205ENSMUST00000228185 1818 ntBASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms