Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Scn11aQ9R053 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Mir6977-201ENSMUST00000184960 64 ntBASIC18.32■□□□□ 0.52
Scn11aQ9R053 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC18.32■□□□□ 0.52
Scn11aQ9R053 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Gm13410-201ENSMUST00000117058 1415 ntBASIC18.32■□□□□ 0.52
Scn11aQ9R053 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Scn11aQ9R053 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn11aQ9R053 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Gm18889-201ENSMUST00000174284 929 ntBASIC18.31■□□□□ 0.52
Scn11aQ9R053 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn11aQ9R053 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Gm8597-201ENSMUST00000191525 1109 ntBASIC18.3■□□□□ 0.52
Scn11aQ9R053 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 AC154767.3-201ENSMUST00000225150 1342 ntBASIC18.3■□□□□ 0.52
Scn11aQ9R053 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC18.3■□□□□ 0.52
Scn11aQ9R053 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn11aQ9R053 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC18.3■□□□□ 0.52
Scn11aQ9R053 AC126408.1-201ENSMUST00000225184 523 ntBASIC18.3■□□□□ 0.52
Scn11aQ9R053 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Gm6018-201ENSMUST00000216090 1306 ntBASIC18.29■□□□□ 0.52
Scn11aQ9R053 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Gm6973-201ENSMUST00000117080 721 ntBASIC18.29■□□□□ 0.52
Scn11aQ9R053 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn11aQ9R053 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms