Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm37153-201ENSMUST00000193637 231 ntBASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Cpsf3Q9QXK7 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Gm1401-201ENSMUST00000122048 772 ntBASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Gm27628-201ENSMUST00000184911 107 ntBASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 AW822252-206ENSMUST00000208904 237 ntBASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.73■□□□□ 0.27
Cpsf3Q9QXK7 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cpsf3Q9QXK7 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Gm14722-201ENSMUST00000118943 689 ntBASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC16.71■□□□□ 0.27
Cpsf3Q9QXK7 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms