Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Trim54Q9ERP3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Gm42918-201ENSMUST00000199249 1580 ntBASIC16.85■□□□□ 0.29
Trim54Q9ERP3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Gm18489-201ENSMUST00000172565 551 ntBASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Trim54Q9ERP3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim54Q9ERP3 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
Trim54Q9ERP3 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Gm26308-201ENSMUST00000157768 69 ntBASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trim54Q9ERP3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Haglr-201ENSMUST00000100000 2085 ntBASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.82■□□□□ 0.28
Trim54Q9ERP3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.82■□□□□ 0.28
Trim54Q9ERP3 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim54Q9ERP3 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms