Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf1Q9EPU0 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.57■□□□□ 0.4
Upf1Q9EPU0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC17.57■□□□□ 0.4
Upf1Q9EPU0 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf1Q9EPU0 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Upf1Q9EPU0 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Gm15236-201ENSMUST00000117309 379 ntBASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Gm28911-201ENSMUST00000188837 117 ntBASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Gm9728-201ENSMUST00000200197 1055 ntBASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 AC238811.3-201ENSMUST00000225422 709 ntBASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf1Q9EPU0 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Gm19220-201ENSMUST00000222682 803 ntBASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf1Q9EPU0 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Gm45784-201ENSMUST00000188360 142 ntBASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Dupd1-202ENSMUST00000224735 548 ntBASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.54■□□□□ 0.4
Upf1Q9EPU0 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Gm18222-201ENSMUST00000202416 1387 ntBASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 AC140451.2-201ENSMUST00000228030 664 ntBASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Gm13233-201ENSMUST00000118760 1443 ntBASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Gm13244-201ENSMUST00000118855 1446 ntBASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf1Q9EPU0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Upf1Q9EPU0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms