Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Gm19164-201ENSMUST00000210667 640 ntBASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Ddx56Q9D0R4 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Gm8344-201ENSMUST00000119813 856 ntBASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ddx56Q9D0R4 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Gm9103-201ENSMUST00000119371 405 ntBASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.38■□□□□ 0.21
Ddx56Q9D0R4 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm8097-201ENSMUST00000117903 829 ntBASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 AC160338.1-201ENSMUST00000214232 705 ntBASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Gm13337-201ENSMUST00000119183 1594 ntBASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx56Q9D0R4 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms